The eVAL would be ready for download within 3 days after its approval. It’s after you could have downloaded it that you can then proceed to Malaysia Embassy or VFS in your home country to apply for the SEV. Yes, there are charges for the SEV based on your country.
The fee you paid to the University – EMGS is for the processing and issuance of your Visa Approval Letter while the fee you will pay at the Malaysian Embassy – VFS in your home country is for Single Entry Visa which is always at a lesser fee compare to what you paid for the VAL. Meanwhile, you need the VAL as part of the required documents for the application of your SEV.
In that case, I advise you kindly wait for the information that will communicated via the Visa Approval Letter upon download. You will be directed further in the letter on what and what you need to do.